ArtocarpusGD - a portal database of Artocarpus multi-omics data

Introduction to Artocarpus

Artocarpus species comprise over 70 tropical plants that play a vital role in food security and sustainable agriculture. These nutrient-rich species support millions of livelihoods and demonstrate significant potential for farming systems and agroforestry applications.

The Artocarpus Genome Database provides seven high-quality genome sequences with eight types of functional annotations. The database integrates multiple bioinformatics tools (BLAST, JBrowse, RNA-seq, Syntenic View, and GeneFamily) to support genomic and transcriptomic analyses. This freely accessible resource is regularly updated to facilitate research on genetic improvement and sustainable utilization of Artocarpus species.

Tools

News [Hide]

01. [Jan. 2025] The genomic data of seven genomes were all included into ArtocarpusGD!

02. [Apr. 2024] The genomic data of seven species were re-annotated with public databases and software, and all annotated information were added into ArtocarpusGD!

03. [Mac. 2023] ArtocarpusGD is online now and welcome to access!

04. [Sep. 2022] The Jackfruit (Artocarpus heterophyllus) released a chromosome-level genome assembly provided insights into fruit evolution and domestication history of China in the Journal of Hortic Res..

05. [Nov. 2022] The Nanchuan Breadfruit (Artocarpus nanchuanensis) released a chromosome-level genome assembly in the Journal of gigascience.

06. [Dec. 2022] The Wild Jack (Artocarpus hirsutus) reported a genome assembly and comparative genomics of Artocarpus in the Journal of Front. Plant Sci..

07. [Dec. 2022] The Jackfruit (Artocarpus heterophyllus Lam.) reported a whole-genome sequencing of a year-round fruit from Bangladesh in the Jouranl of Front. Plant Sci..

08. [Jun. 2019] ArtocarpusGD containing 3 Artocarpus genomes is on line now and welcome to access!

09. [Nov. 2021] The Jackfruit and Breadfruit (Artocarpus heterophyllus and Artocarpus altilis) released draft genomes assembly in the Journal of Genes.

10. [Jun. 2019] ArtocarpusGD is conceived to develop and one Artocarpus genome data were collected from public databases!

Publications

1. Lin X et al., Jackfruit genome and population genomics provide insights into fruit evolution and domestication history in China Hortic Res. 2022;9:uhac173. [PubMed]

2. He J et al., A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree. Gigascience. 2022;11:giac042. [PubMed]

3. Patil AB et al., Jack of all trades: Genome assembly of Wild Jack and comparative genomics of Artocarpus. Front Plant Sci. 2022;13:1029540. [PubMed]

4. Islam T et al., Whole-genome sequencing of a year-round fruiting jackfruit (Artocarpus heterophyllus Lam.) reveals high levels of single nucleotide variation. Front Plant Sci. 2022;13:1044420. [PubMed]

5. Sahu SK et al., Draft genomes of two Artocarpus plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis). Genes (Basel). 2019;11(1):27. [PubMed]

6. Gardner EM et al., Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery. Appl Plant Sci. 2016;4(7):apps.1600017. [PubMed]

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